Variant report

Variant	rs17492567
Chromosome Location	chr2:50212116-50212117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10172768	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10495989	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11891637	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11893341	0.83[EUR][1000 genomes]
rs11897683	0.90[CEU][hapmap]
rs12469906	1.00[CHD][hapmap]
rs17039606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17039676	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs17493894	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17494917	0.90[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6726132	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6730936	0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.94[ASN][1000 genomes]
rs6745029	0.90[CEU][hapmap]
rs7568888	0.90[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7571903	0.90[CEU][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7586095	0.90[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7604754	0.82[ASW][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932839	chr2:50181785-50225697	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv874031	chr2:50202953-50243386	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17492567	NRXN1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50205600-50212600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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