Variant report

Variant	rs17492862
Chromosome Location	chr8:20498859-20498860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10464996	1.00[AFR][1000 genomes]
rs10503682	1.00[AFR][1000 genomes]
rs10503684	1.00[AFR][1000 genomes]
rs1376004	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1383248	1.00[AFR][1000 genomes]
rs17092733	1.00[AFR][1000 genomes]
rs17092835	0.89[EUR][1000 genomes]
rs17092884	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17420434	1.00[AFR][1000 genomes]
rs17420455	1.00[AFR][1000 genomes]
rs17421224	0.83[ASN][1000 genomes]
rs17492344	1.00[AFR][1000 genomes]
rs17603878	1.00[AFR][1000 genomes]
rs17603885	1.00[AFR][1000 genomes]
rs17604003	1.00[AFR][1000 genomes]
rs1947258	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1979430	1.00[AFR][1000 genomes]
rs1979431	1.00[AFR][1000 genomes]
rs1979432	1.00[AFR][1000 genomes]
rs2167173	1.00[AFR][1000 genomes]
rs28489556	0.89[EUR][1000 genomes]
rs28497712	0.89[EUR][1000 genomes]
rs28534019	0.84[EUR][1000 genomes]
rs28597821	0.89[EUR][1000 genomes]
rs28705313	0.89[EUR][1000 genomes]
rs2898517	0.89[EUR][1000 genomes]
rs34765384	1.00[AFR][1000 genomes]
rs4922210	1.00[AFR][1000 genomes]
rs6989281	1.00[AFR][1000 genomes]
rs6994255	1.00[AFR][1000 genomes]
rs6999584	1.00[AFR][1000 genomes]
rs6999736	1.00[AFR][1000 genomes]
rs7011434	0.84[EUR][1000 genomes]
rs73626736	0.82[EUR][1000 genomes]
rs7845060	1.00[AFR][1000 genomes]
rs985924	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916454	chr8:20342959-20531705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20497400-20501400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:20498200-20501000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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