Variant report

Variant	rs1749324
Chromosome Location	chr10:95933360-95933361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1228531	1.00[AMR][1000 genomes]
rs1346045	1.00[AMR][1000 genomes]
rs1749323	1.00[AMR][1000 genomes]
rs2689696	1.00[AMR][1000 genomes]
rs2689701	1.00[AMR][1000 genomes]
rs2764342	1.00[AMR][1000 genomes]
rs2949003	1.00[AMR][1000 genomes]
rs57730765	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95924800-95947200	Weak transcription	Aorta	Aorta
2	chr10:95925800-95938000	Weak transcription	A549	lung
3	chr10:95929000-95954200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95929200-95966800	Weak transcription	Pancreas	Pancrea
5	chr10:95929600-95934200	Weak transcription	Adipose Nuclei	Adipose
6	chr10:95929800-95936800	Weak transcription	Fetal Lung	lung
7	chr10:95930200-95933400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:95931400-95934400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:95931600-95938200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:95931600-95953000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:95931800-95952600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:95932000-95934200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:95932000-95940600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:95932000-95944200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:95932000-95948800	Weak transcription	Gastric	stomach
16	chr10:95932000-95953000	Weak transcription	Colonic Mucosa	Colon
17	chr10:95932400-95938000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:95932400-95939000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:95932600-95935800	Weak transcription	Fetal Intestine Small	intestine
20	chr10:95932600-95936600	Weak transcription	Fetal Stomach	stomach
21	chr10:95932600-95968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:95932800-95933400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:95932800-95940600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:95932800-95954200	Weak transcription	Fetal Brain Female	brain
25	chr10:95933000-95933400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:95933000-95953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:95933000-95954200	Weak transcription	Right Atrium	heart
28	chr10:95933000-95972600	Weak transcription	Fetal Intestine Large	intestine
29	chr10:95933200-95934400	Weak transcription	Ovary	ovary
30	chr10:95933200-95936000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:95933200-95937800	Weak transcription	Fetal Muscle Leg	muscle

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