Variant report

Variant	rs17494112
Chromosome Location	chr12:42355218-42355219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11181281	0.80[ASN][1000 genomes]
rs11181282	0.84[AFR][1000 genomes]
rs11181283	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11181332	0.81[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap]
rs11181344	0.82[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap]
rs11181347	0.88[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs12580692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852593	0.86[MEX][hapmap]
rs3852594	0.90[ASW][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap]
rs58487091	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972986	0.90[ASW][hapmap];0.82[CEU][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17494112	ZCRB1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42353600-42355600	Weak transcription	Fetal Intestine Large	intestine
2	chr12:42354200-42357400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr12:42354400-42355800	Enhancers	Brain Hippocampus Middle	brain
4	chr12:42354400-42356400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:42354400-42356400	Enhancers	Brain Germinal Matrix	brain
6	chr12:42354800-42355800	Enhancers	Brain Cingulate Gyrus	brain
7	chr12:42355000-42356600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:42355200-42355400	Enhancers	Brain Anterior Caudate	brain
9	chr12:42355200-42356400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links