Variant report

Variant	rs17494871
Chromosome Location	chr18:25711578-25711579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17494502	0.82[AFR][1000 genomes]
rs17522680	0.88[AFR][1000 genomes]
rs17536111	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
2	chr18:25696600-25715800	Weak transcription	HUVEC	blood vessel
3	chr18:25697800-25715600	Weak transcription	Dnd41	blood
4	chr18:25702000-25712000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25703800-25727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:25703800-25730000	Weak transcription	Aorta	Aorta
7	chr18:25705000-25727800	Weak transcription	Ovary	ovary
8	chr18:25705200-25727400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr18:25705800-25711800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:25706600-25713000	Enhancers	Brain Germinal Matrix	brain
11	chr18:25706800-25713200	Enhancers	Fetal Heart	heart
12	chr18:25707000-25712200	Weak transcription	Fetal Brain Male	brain
13	chr18:25708800-25711800	Weak transcription	Left Ventricle	heart
14	chr18:25708800-25712000	Weak transcription	Right Ventricle	heart
15	chr18:25708800-25714600	Weak transcription	HSMM	muscle
16	chr18:25708800-25719200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr18:25708800-25721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr18:25709000-25711800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr18:25709000-25714800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr18:25709000-25719600	Weak transcription	Osteobl	bone
21	chr18:25709000-25724400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr18:25709200-25715800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:25709400-25713200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr18:25709400-25727600	Weak transcription	A549	lung
25	chr18:25710200-25712000	Weak transcription	Liver	Liver
26	chr18:25710200-25727600	Weak transcription	HepG2	liver
27	chr18:25710400-25711800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:25710400-25712400	Weak transcription	Brain Angular Gyrus	brain
29	chr18:25710400-25726400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr18:25710400-25726400	Weak transcription	Fetal Brain Female	brain
31	chr18:25710400-25727600	Weak transcription	Brain Anterior Caudate	brain
32	chr18:25710400-25727600	Weak transcription	Brain Substantia Nigra	brain
33	chr18:25710600-25712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr18:25710600-25725000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr18:25710600-25727400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr18:25710600-25731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr18:25710800-25711600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr18:25710800-25712000	Weak transcription	Right Atrium	heart
39	chr18:25710800-25712800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr18:25710800-25714800	Weak transcription	NH-A	brain
41	chr18:25711000-25711800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr18:25711200-25711800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr18:25711400-25712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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