Variant report

Variant	rs17495160
Chromosome Location	chr18:25733804-25733805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17494676	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17495056	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17495119	1.00[AMR][1000 genomes]
rs17536229	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17536243	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17536827	1.00[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25717600-25753400	Weak transcription	Dnd41	blood
2	chr18:25726000-25739200	Weak transcription	HSMM	muscle
3	chr18:25726000-25745400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:25728000-25737400	Weak transcription	Fetal Lung	lung
5	chr18:25728200-25739200	Weak transcription	HepG2	liver
6	chr18:25728800-25754200	Weak transcription	HUVEC	blood vessel
7	chr18:25729200-25737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:25729200-25739000	Weak transcription	A549	lung
9	chr18:25730000-25735000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr18:25730000-25738000	Weak transcription	Fetal Stomach	stomach
11	chr18:25730200-25738000	Weak transcription	Aorta	Aorta
12	chr18:25730400-25736200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:25730400-25736400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:25730600-25736200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr18:25730800-25738800	Enhancers	Brain Substantia Nigra	brain
16	chr18:25731000-25734600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:25731000-25734800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr18:25731000-25734800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:25731000-25736000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr18:25731000-25736000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr18:25731000-25738000	Enhancers	Brain Angular Gyrus	brain
22	chr18:25731000-25738000	Enhancers	Brain Anterior Caudate	brain
23	chr18:25731600-25734000	Enhancers	Fetal Brain Female	brain
24	chr18:25731600-25734200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:25731600-25736800	Weak transcription	Liver	Liver
26	chr18:25731800-25740600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr18:25732200-25734000	Enhancers	Right Atrium	heart
28	chr18:25732400-25734400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr18:25732400-25735200	Enhancers	Left Ventricle	heart
30	chr18:25732400-25735600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr18:25732400-25736000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr18:25732600-25734000	Enhancers	Fetal Kidney	kidney
33	chr18:25732600-25736800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr18:25732800-25734200	Enhancers	Brain Hippocampus Middle	brain
35	chr18:25732800-25736400	Enhancers	Brain Germinal Matrix	brain
36	chr18:25732800-25737800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr18:25733000-25734000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr18:25733000-25734200	Enhancers	Brain Cingulate Gyrus	brain
39	chr18:25733000-25735800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr18:25733000-25736200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr18:25733000-25738400	Weak transcription	Gastric	stomach
42	chr18:25733000-25741600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr18:25733400-25734000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr18:25733600-25734000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr18:25733600-25734000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr18:25733600-25734000	Enhancers	Rectal Smooth Muscle	rectum
47	chr18:25733600-25734200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr18:25733600-25735600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr18:25733600-25736000	Enhancers	H1 Cell Line	embryonic stem cell
50	chr18:25733600-25736600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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