Variant report

Variant	rs17500047
Chromosome Location	chr1:91944368-91944369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11164839	0.83[CEU][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs11165717	1.00[ASN][1000 genomes]
rs11165718	1.00[ASN][1000 genomes]
rs11576679	1.00[ASN][1000 genomes]
rs11578924	1.00[ASN][1000 genomes]
rs11584206	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs12085185	0.84[EUR][1000 genomes]
rs17485959	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17558404	1.00[ASN][1000 genomes]
rs2893171	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs499044	1.00[CEU][hapmap];0.88[GIH][hapmap];0.89[TSI][hapmap];1.00[ASN][1000 genomes]
rs58606952	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61798779	1.00[ASN][1000 genomes]
rs61798788	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61798793	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61798798	0.87[EUR][1000 genomes]
rs61798959	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17500047	CDC7	cis	Thyroid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91942600-91944400	Weak transcription	Ovary	ovary
2	chr1:91943400-91944400	Weak transcription	Fetal Stomach	stomach
3	chr1:91944200-91944400	Enhancers	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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