Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175803143..175807498-chr1:175810197..175814751,4	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10913079	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12040251	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1340998	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1359585	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1359586	0.85[ASN][1000 genomes]
rs1575824	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1925947	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2090977	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2209558	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2222419	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs485526	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs515007	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566433	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6425362	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6656072	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6667697	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6667913	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7537751	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs860895	0.93[EUR][1000 genomes]
rs990707	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175804200-175808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:175804200-175809000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:175804200-175810600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:175804400-175808800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:175804600-175809000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:175804600-175809000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:175804800-175808600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:175804800-175808800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:175805000-175808600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:175805000-175809000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:175806000-175808800	Weak transcription	Fetal Intestine Small	intestine
12	chr1:175806200-175807600	Weak transcription	Fetal Intestine Large	intestine
13	chr1:175806600-175808000	Weak transcription	Hela-S3	cervix
14	chr1:175806600-175808200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:175806600-175817200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: