Variant report

Variant	rs17503402
Chromosome Location	chr4:151136160-151136161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11727182	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11930207	0.82[ASN][1000 genomes]
rs1459750	0.85[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs1993656	0.89[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs34681163	0.84[ASN][1000 genomes]
rs3925117	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535725	0.86[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.85[MEX][hapmap];0.94[YRI][hapmap];0.92[ASN][1000 genomes]
rs9683765	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17503402	FAM160A1	cis	cerebellum	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151103200-151138000	Weak transcription	NH-A	brain
2	chr4:151114200-151154200	Weak transcription	Aorta	Aorta
3	chr4:151122200-151137800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:151123800-151136800	Weak transcription	Fetal Intestine Large	intestine
5	chr4:151128000-151137000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:151128000-151138000	Weak transcription	Brain Substantia Nigra	brain
7	chr4:151128000-151138000	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:151128200-151137800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:151128400-151138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:151128600-151137800	Weak transcription	Brain Anterior Caudate	brain
11	chr4:151129400-151137600	Weak transcription	Fetal Brain Male	brain
12	chr4:151130400-151138000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:151130600-151156000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:151132600-151138200	Weak transcription	Fetal Brain Female	brain
15	chr4:151132600-151143200	Weak transcription	Fetal Stomach	stomach
16	chr4:151132800-151137400	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:151132800-151150400	Weak transcription	Pancreas	Pancrea
18	chr4:151133200-151138400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:151133200-151145600	Weak transcription	HSMMtube	muscle
20	chr4:151133200-151150400	Weak transcription	Right Ventricle	heart
21	chr4:151133400-151137800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:151133400-151138200	Weak transcription	Fetal Lung	lung
23	chr4:151133400-151150400	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:151133600-151136400	Weak transcription	Brain Germinal Matrix	brain
25	chr4:151133600-151138000	Weak transcription	Fetal Kidney	kidney
26	chr4:151133600-151138000	Weak transcription	Osteobl	bone
27	chr4:151133800-151138000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:151133800-151141000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:151134000-151138000	Weak transcription	NHDF-Ad	bronchial
30	chr4:151134400-151136400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:151134400-151136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:151134400-151136400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:151134400-151136400	Weak transcription	Placenta	Placenta
34	chr4:151134400-151136400	Weak transcription	Left Ventricle	heart
35	chr4:151134400-151136600	Weak transcription	A549	lung
36	chr4:151134400-151138200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:151134600-151136400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:151134600-151136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:151134600-151136400	Weak transcription	Fetal Heart	heart
40	chr4:151134600-151136600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:151134600-151136600	Weak transcription	NHEK	skin
42	chr4:151134600-151138000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:151134600-151138200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:151134600-151138200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:151134600-151141600	Weak transcription	HSMM	muscle
46	chr4:151134800-151136200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:151135200-151136800	Weak transcription	HMEC	breast
48	chr4:151135400-151136400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:151135400-151136400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:151135400-151139600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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