Variant report

Variant	rs17504442
Chromosome Location	chr4:151333588-151333589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12498862	0.82[ASN][1000 genomes]
rs12499470	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12500337	0.93[ASN][1000 genomes]
rs12502486	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12503093	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506612	0.85[ASN][1000 genomes]
rs12507785	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12508149	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17504359	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17589028	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17589134	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1979920	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2036552	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2360071	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41386148	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56714695	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535735	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812262	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6817796	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6833359	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839345	0.85[ASN][1000 genomes]
rs6849869	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677055	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681051	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7699001	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8180280	0.90[CHB][hapmap]
rs952097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151272000-151371400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:151286600-151355600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:151290200-151367400	Weak transcription	K562	blood
4	chr4:151292400-151361000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:151307000-151348800	Weak transcription	Aorta	Aorta
6	chr4:151311600-151343800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:151313200-151358200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:151313600-151358000	Weak transcription	GM12878-XiMat	blood
9	chr4:151314600-151342800	Weak transcription	Primary T cells from cord blood	blood
10	chr4:151315600-151344000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:151315800-151359400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:151317400-151358800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:151319000-151371000	Weak transcription	Left Ventricle	heart
14	chr4:151321200-151342800	Weak transcription	Fetal Intestine Small	intestine
15	chr4:151321400-151334400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:151321800-151342800	Weak transcription	Fetal Intestine Large	intestine
17	chr4:151324400-151343600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:151324400-151344000	Weak transcription	Gastric	stomach
19	chr4:151324600-151334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:151324600-151344000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:151324800-151336200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:151327200-151336000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr4:151328800-151344200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:151329000-151336000	Weak transcription	Ovary	ovary
25	chr4:151329600-151340600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:151331400-151358800	Weak transcription	Liver	Liver
27	chr4:151332600-151333600	Enhancers	Colon Smooth Muscle	Colon
28	chr4:151332800-151333800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:151332800-151353000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:151333000-151334600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:151333000-151340400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:151333000-151343800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr4:151333000-151357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:151333000-151408000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr4:151333200-151336400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:151333200-151343400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:151333200-151351600	Weak transcription	Primary B cells from cord blood	blood
38	chr4:151333400-151336800	Weak transcription	HUVEC	blood vessel
39	chr4:151333400-151341000	Weak transcription	Adipose Nuclei	Adipose

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