Variant report

Variant	rs17504764
Chromosome Location	chr8:118955867-118955868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:118954460..118956663-chr8:118958753..118960778,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17475911	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17475918	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17475925	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17475939	0.85[YRI][hapmap]
rs17475952	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17504694	0.89[YRI][hapmap]
rs17504729	0.81[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17504743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17504750	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17504757	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73323928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704835	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831440	chr8:118871930-119052269	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032355	chr8:118896733-119003223	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv465785	chr8:118901928-118970300	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv612046	chr8:118901928-118970300	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118935200-118958600	Weak transcription	Esophagus	oesophagus
2	chr8:118946800-118958600	Weak transcription	Pancreas	Pancrea
3	chr8:118947000-118956000	Weak transcription	Gastric	stomach
4	chr8:118947400-118960600	Weak transcription	Right Ventricle	heart
5	chr8:118950000-118958800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:118950400-118956000	Weak transcription	Fetal Thymus	thymus
7	chr8:118950400-118956200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:118950400-118958600	Weak transcription	Fetal Heart	heart
9	chr8:118950400-118958600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr8:118950400-118958600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:118950400-118960200	Weak transcription	Psoas Muscle	Psoas
12	chr8:118950600-118956000	Weak transcription	Fetal Intestine Large	intestine
13	chr8:118950600-118958000	Weak transcription	HepG2	liver
14	chr8:118950600-118958200	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:118950600-118960600	Weak transcription	Ovary	ovary
16	chr8:118950800-118956000	Weak transcription	Small Intestine	intestine
17	chr8:118950800-118959200	Weak transcription	Fetal Stomach	stomach
18	chr8:118953200-118958600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:118953200-118960000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:118953400-118958400	Weak transcription	Fetal Lung	lung
21	chr8:118953400-118958600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:118953400-118959200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:118953800-118956000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:118953800-118956000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:118953800-118956000	Weak transcription	Aorta	Aorta
26	chr8:118953800-118956000	Weak transcription	Fetal Intestine Small	intestine
27	chr8:118953800-118958400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:118953800-118958600	Weak transcription	Adipose Nuclei	Adipose
29	chr8:118953800-118958600	Weak transcription	Left Ventricle	heart
30	chr8:118953800-118958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:118953800-118958800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr8:118953800-118959000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr8:118953800-118959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr8:118953800-118959000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:118953800-118959200	Weak transcription	Fetal Kidney	kidney
36	chr8:118953800-118959400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr8:118953800-118959800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr8:118954000-118956000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr8:118954000-118956000	Weak transcription	Placenta	Placenta
40	chr8:118954000-118956000	Weak transcription	HSMMtube	muscle
41	chr8:118954000-118959600	Weak transcription	HSMM	muscle
42	chr8:118954200-118956000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:118954200-118956000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:118954200-118956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:118954200-118957800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr8:118954200-118958600	Weak transcription	Lung	lung
47	chr8:118954200-118959000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr8:118954400-118956000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:118954400-118956000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr8:118954400-118956000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links