Variant report

Variant	rs17504987
Chromosome Location	chr13:30750249-30750250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4572235	1.00[AMR][1000 genomes]
rs649241	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30740400-30753400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:30740600-30752800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:30747600-30766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:30747800-30756200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:30748000-30752200	Weak transcription	Thymus	Thymus
6	chr13:30748800-30752400	Weak transcription	Fetal Thymus	thymus
7	chr13:30748800-30756400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:30750200-30750600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links