Variant report

Variant	rs17505315
Chromosome Location	chr15:44381159-44381160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10438304	1.00[CEU][hapmap]
rs28431326	0.96[EUR][1000 genomes]
rs28525216	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs28645532	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28670868	0.82[EUR][1000 genomes]
rs28707435	0.82[EUR][1000 genomes]
rs28830267	1.00[EUR][1000 genomes]
rs3742981	0.88[TSI][hapmap]
rs8031749	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3364317	chr15:44367781-44382890	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44373600-44392800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:44377200-44381800	Weak transcription	Brain Substantia Nigra	brain
3	chr15:44377200-44384000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:44378800-44381200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:44378800-44381200	Enhancers	NHEK	skin
6	chr15:44379000-44381200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:44379000-44381200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:44379000-44381200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:44379000-44381600	Enhancers	HMEC	breast
10	chr15:44379200-44383000	Weak transcription	Brain Anterior Caudate	brain
11	chr15:44379400-44382200	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:44379400-44397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:44379600-44381200	Enhancers	HUVEC	blood vessel
14	chr15:44379600-44381200	Enhancers	Osteobl	bone
15	chr15:44379800-44384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:44380000-44384200	Weak transcription	HSMM	muscle
17	chr15:44380200-44381200	Enhancers	A549	lung
18	chr15:44380200-44381200	Enhancers	NH-A	brain
19	chr15:44380200-44384400	Weak transcription	Brain Angular Gyrus	brain
20	chr15:44380400-44384400	Weak transcription	NHLF	lung
21	chr15:44380600-44384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:44380800-44383400	Weak transcription	HSMMtube	muscle
23	chr15:44380800-44384200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:44380800-44384400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:44380800-44387600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:44381000-44381200	Enhancers	Brain Cingulate Gyrus	brain
27	chr15:44381000-44381800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:44381000-44383600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:44381000-44384200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:44381000-44384200	Weak transcription	NHDF-Ad	bronchial
31	chr15:44381000-44384400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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