Variant report

Variant	rs17509413
Chromosome Location	chr2:86045162-86045163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10445962	0.88[CEU][hapmap]
rs12104455	0.86[AFR][1000 genomes]
rs12997305	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13005861	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13031939	1.00[ASN][1000 genomes]
rs17431365	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878900	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139199	0.88[CEU][hapmap];0.95[GIH][hapmap]
rs2139202	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34593202	1.00[ASN][1000 genomes]
rs34812137	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35210068	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35504275	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35699834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35821122	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35909216	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56119161	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147505	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72842067	1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17509413	ST3GAL5	Cis_1M	lymphoblastoid	RTeQTL
rs17509413	LOC90784	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86029800-86054400	Weak transcription	Spleen	Spleen
2	chr2:86039800-86074800	Weak transcription	Aorta	Aorta
3	chr2:86041400-86045200	Weak transcription	Ovary	ovary
4	chr2:86041400-86049600	Weak transcription	Lung	lung
5	chr2:86042200-86054800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:86042600-86047400	Weak transcription	A549	lung
7	chr2:86044800-86045400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr2:86044800-86045400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:86044800-86045600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:86044800-86045600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:86044800-86045800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:86045000-86045400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:86045000-86045800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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