Variant report

Variant	rs1751004
Chromosome Location	chr13:95828755-95828756
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95827296..95830102-chr13:95830426..95833781,3	K562	blood:
2	chr13:95821172..95824046-chr13:95827548..95829686,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17300865	0.91[AMR][1000 genomes]
rs1751003	0.99[ASN][1000 genomes]
rs2478461	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
3	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
4	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
5	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
6	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
8	chr13:95807400-95837800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr13:95807600-95829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:95808200-95841800	Weak transcription	Osteobl	bone
11	chr13:95808400-95833400	Weak transcription	Fetal Kidney	kidney
12	chr13:95808400-95854600	Weak transcription	NHEK	skin
13	chr13:95809000-95829200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr13:95810400-95829000	Weak transcription	Adipose Nuclei	Adipose
15	chr13:95810400-95836200	Weak transcription	Fetal Thymus	thymus
16	chr13:95810400-95836400	Weak transcription	Thymus	Thymus
17	chr13:95812400-95831400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:95812800-95833400	Weak transcription	Pancreas	Pancrea
19	chr13:95813200-95858000	Weak transcription	Aorta	Aorta
20	chr13:95814600-95832400	Weak transcription	HepG2	liver
21	chr13:95814800-95831200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr13:95814800-95833400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:95815000-95844200	Weak transcription	Fetal Muscle Leg	muscle
24	chr13:95815200-95847800	Weak transcription	Hela-S3	cervix
25	chr13:95817000-95830000	Weak transcription	Small Intestine	intestine
26	chr13:95817200-95833400	Weak transcription	Psoas Muscle	Psoas
27	chr13:95817400-95832800	Weak transcription	Stomach Mucosa	stomach
28	chr13:95818000-95829200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr13:95818200-95841800	Weak transcription	NHDF-Ad	bronchial
30	chr13:95818600-95830000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr13:95822000-95829800	Weak transcription	Ovary	ovary
32	chr13:95822000-95834600	Weak transcription	Fetal Stomach	stomach
33	chr13:95822000-95837000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr13:95823600-95844400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:95823800-95829000	Weak transcription	Fetal Intestine Large	intestine
36	chr13:95824000-95830800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr13:95824400-95833400	Weak transcription	Left Ventricle	heart
38	chr13:95824600-95831000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:95824600-95840000	Weak transcription	Fetal Lung	lung
40	chr13:95824800-95831400	Strong transcription	A549	lung
41	chr13:95825000-95829000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr13:95825000-95831000	Strong transcription	Fetal Intestine Small	intestine
43	chr13:95825200-95830400	Strong transcription	Lung	lung
44	chr13:95825200-95830800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr13:95825200-95830800	Strong transcription	Stomach Smooth Muscle	stomach
46	chr13:95825400-95829200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr13:95825400-95830400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr13:95825400-95830600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr13:95825400-95831200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr13:95825400-95841400	Weak transcription	HUVEC	blood vessel

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