Variant report

Variant	rs1751069
Chromosome Location	chr13:95784249-95784250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95782636..95784986-chr13:95795437..95796972,2	MCF-7	breast:
2	chr13:95783276..95785945-chr13:95785951..95788414,2	MCF-7	breast:
3	chr13:95782617..95784261-chr13:95786018..95787574,3	K562	blood:
4	chr13:95778706..95780869-chr13:95783662..95787661,3	K562	blood:
5	chr13:95773275..95777718-chr13:95779226..95784336,7	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7323306	1.00[AMR][1000 genomes]
rs73548889	1.00[AMR][1000 genomes]
rs7983813	1.00[AMR][1000 genomes]
rs9302057	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95727000-95791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:95727000-95812000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr13:95731200-95791600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr13:95740800-95791200	Weak transcription	NHLF	lung
5	chr13:95750400-95812400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr13:95750400-95815400	Weak transcription	Fetal Intestine Large	intestine
7	chr13:95751000-95793400	Weak transcription	Fetal Kidney	kidney
8	chr13:95751600-95795600	Weak transcription	Small Intestine	intestine
9	chr13:95752000-95789000	Weak transcription	Aorta	Aorta
10	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr13:95754000-95794800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:95756400-95828200	Weak transcription	HSMM	muscle
14	chr13:95757600-95814400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr13:95758000-95791600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr13:95761400-95789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:95762200-95817200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr13:95762400-95811800	Weak transcription	K562	blood
19	chr13:95768200-95806600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:95768200-95819000	Weak transcription	Fetal Intestine Small	intestine
21	chr13:95769000-95789400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:95769400-95791200	Weak transcription	Esophagus	oesophagus
23	chr13:95769800-95789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:95770200-95789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:95774400-95788800	Weak transcription	GM12878-XiMat	blood
26	chr13:95774400-95788800	Weak transcription	NHEK	skin
27	chr13:95774600-95791200	Weak transcription	Primary T cells from cord blood	blood
28	chr13:95774600-95815800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr13:95776600-95789400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr13:95776800-95785600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:95776800-95789400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr13:95778600-95791800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr13:95778800-95799200	Weak transcription	Colon Smooth Muscle	Colon
34	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
35	chr13:95780200-95785800	Weak transcription	Lung	lung
36	chr13:95780800-95791200	Weak transcription	Gastric	stomach
37	chr13:95781000-95791200	Weak transcription	Pancreas	Pancrea
38	chr13:95781000-95792200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:95781000-95802400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr13:95781600-95791200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr13:95782000-95828000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr13:95782600-95786400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr13:95783200-95788800	Weak transcription	A549	lung
44	chr13:95783400-95803800	Weak transcription	Fetal Lung	lung
45	chr13:95784000-95788800	Weak transcription	Stomach Mucosa	stomach
46	chr13:95784200-95789200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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