Variant report

Variant	rs17511776
Chromosome Location	chr9:6957644-6957645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10975907	0.86[EUR][1000 genomes]
rs10975933	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11788152	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11788187	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11788687	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11788849	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11789124	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11789248	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11789250	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11790720	0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11792082	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11792447	0.96[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11792899	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11794598	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11794707	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11794732	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11794838	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683541	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12684006	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12684331	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12684647	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12685041	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12686116	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12686353	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1340517	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16925247	1.00[YRI][hapmap]
rs17511187	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17511250	0.96[CEU][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17595667	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17595843	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17595877	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17595898	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17596052	0.96[CEU][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3818891	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3818892	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818894	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818895	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818898	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818899	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3818900	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818901	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4537355	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55686117	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55790433	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55978538	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56036039	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56069635	0.84[EUR][1000 genomes]
rs56185621	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56279813	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56357252	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57005961	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58143962	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58213169	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58307562	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58361204	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58378352	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58977474	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59337249	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59636651	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59999598	0.88[EUR][1000 genomes]
rs60173310	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60392055	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61204407	0.81[EUR][1000 genomes]
rs61685780	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62533762	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62533769	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533773	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62533774	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62533787	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62533788	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62533789	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533790	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62533791	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62533792	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62533794	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533818	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533819	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533820	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533821	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533822	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533823	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533824	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62533825	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533827	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533828	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533829	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533830	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533831	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533832	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533833	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533834	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62533837	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62533838	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62533839	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62533840	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67642242	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67866005	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68190370	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7019027	1.00[YRI][hapmap]
rs7025865	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7026899	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7040935	0.90[EUR][1000 genomes]
rs7042372	0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs72701484	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72701487	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73410616	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7863137	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7867935	1.00[YRI][hapmap]
rs818901	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
7	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
8	nsv613252	chr9:6715730-7022554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv1023461	chr9:6774993-7022554	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv831500	chr9:6847952-6992535	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv831501	chr9:6868099-7058526	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv892184	chr9:6906384-6985602	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv892185	chr9:6929053-7070962	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1021234	chr9:6933222-7015397	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv870178	chr9:6941584-7060029	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv892186	chr9:6942605-7075305	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1018732	chr9:6951700-6979382	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6890000-6987200	Weak transcription	Aorta	Aorta
2	chr9:6893800-6981600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:6896200-6959000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:6912400-6978400	Weak transcription	Esophagus	oesophagus
5	chr9:6921800-6960400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:6922200-6959000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:6922600-6981000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:6931400-6958600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:6931400-6960000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:6932800-6985000	Weak transcription	Spleen	Spleen
11	chr9:6936800-6965200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:6938800-6960400	Weak transcription	Adipose Nuclei	Adipose
13	chr9:6939400-6967200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:6939400-6978600	Weak transcription	Lung	lung
15	chr9:6943600-6960000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:6945000-6981000	Weak transcription	Liver	Liver
17	chr9:6945200-6960600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:6945200-6982600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:6950000-6960000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:6953000-6982600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:6953800-6958000	Enhancers	Brain Angular Gyrus	brain
22	chr9:6954200-6960600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:6954200-6968200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:6954200-6994800	Weak transcription	Gastric	stomach
25	chr9:6954800-6958000	Enhancers	Brain Substantia Nigra	brain
26	chr9:6955000-6957800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:6955000-6958000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:6955000-6958000	Enhancers	HSMMtube	muscle
29	chr9:6955400-6958000	Enhancers	Fetal Lung	lung
30	chr9:6955400-6959800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:6955400-6982400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr9:6955400-6982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:6955400-6984200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:6955600-6959200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr9:6955600-6959200	Weak transcription	Primary T cells from cord blood	blood
36	chr9:6955600-6960200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:6955600-6960400	Weak transcription	Left Ventricle	heart
38	chr9:6955600-6964000	Weak transcription	Right Ventricle	heart
39	chr9:6955600-6984200	Weak transcription	Small Intestine	intestine
40	chr9:6955800-6960600	Weak transcription	K562	blood
41	chr9:6956000-6957800	Enhancers	Brain Cingulate Gyrus	brain
42	chr9:6956000-6958000	Enhancers	Brain Anterior Caudate	brain
43	chr9:6956000-6958000	Enhancers	Brain Hippocampus Middle	brain
44	chr9:6956000-6958200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:6956000-6958400	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr9:6956000-6959000	Weak transcription	Stomach Mucosa	stomach
47	chr9:6956000-6959000	Weak transcription	HUVEC	blood vessel
48	chr9:6956000-6959200	Weak transcription	GM12878-XiMat	blood
49	chr9:6956000-6959600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:6956000-6960600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links