Variant report

Variant	rs17516630
Chromosome Location	chr2:141571938-141571939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10191182	0.80[CEU][hapmap]
rs1025337	1.00[CEU][hapmap]
rs10928073	1.00[CEU][hapmap]
rs10928074	0.93[EUR][1000 genomes]
rs1120487	1.00[CEU][hapmap]
rs1120488	1.00[CEU][hapmap]
rs1124785	0.89[CEU][hapmap]
rs11674928	0.96[CEU][hapmap]
rs11677778	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs11678482	0.92[CEU][hapmap]
rs11684411	1.00[CEU][hapmap]
rs11686050	0.95[CEU][hapmap]
rs12616902	0.85[EUR][1000 genomes]
rs12620422	0.89[CEU][hapmap]
rs12621209	0.88[CEU][hapmap]
rs12623466	0.92[CEU][hapmap]
rs13009144	0.88[CHB][hapmap]
rs13010984	0.86[CHB][hapmap]
rs13030928	0.88[CHB][hapmap]
rs13423554	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs13423651	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap]
rs1429330	0.96[CEU][hapmap]
rs1429333	0.96[CEU][hapmap]
rs1429356	0.88[CHB][hapmap]
rs1429369	0.84[CEU][hapmap]
rs17514829	0.84[CEU][hapmap]
rs17515225	0.89[CEU][hapmap]
rs17515498	0.92[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap]
rs17515899	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17516434	1.00[CEU][hapmap]
rs17575847	1.00[CEU][hapmap]
rs1843585	0.92[CEU][hapmap]
rs1963394	0.96[CEU][hapmap]
rs2046506	1.00[CEU][hapmap]
rs2171173	1.00[CEU][hapmap]
rs2380889	0.92[CEU][hapmap]
rs2380893	0.89[CEU][hapmap]
rs3828265	1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap]
rs4616417	0.92[CEU][hapmap]
rs4954860	0.88[CEU][hapmap]
rs56313835	0.90[EUR][1000 genomes]
rs6429844	0.95[CEU][hapmap]
rs6429845	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs6429846	0.97[EUR][1000 genomes]
rs6720709	0.92[CEU][hapmap]
rs6720793	1.00[CEU][hapmap];0.87[GIH][hapmap];0.98[TSI][hapmap]
rs6727952	0.82[CHB][hapmap]
rs6735583	0.88[CHB][hapmap]
rs6738178	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs6749275	1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap]
rs6749707	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap]
rs7571628	0.96[CEU][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes]
rs7578679	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7606602	0.92[CEU][hapmap]
rs7606833	0.92[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap]
rs9653169	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875202	chr2:141448312-141587228	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv875203	chr2:141448312-141592252	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875204	chr2:141496596-141592252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv875205	chr2:141500692-141592252	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv875207	chr2:141517652-141592252	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv583199	chr2:141551350-141583206	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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