Variant report

Variant	rs17517552
Chromosome Location	chr2:141600509-141600510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10191182	0.86[CHB][hapmap]
rs1025337	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11674928	0.86[CHB][hapmap]
rs11677778	0.87[CHB][hapmap]
rs11678482	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11684411	0.86[CHB][hapmap]
rs11686050	0.86[CHB][hapmap]
rs11694855	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11893770	0.85[CHB][hapmap]
rs12620422	0.87[CHB][hapmap]
rs12621209	0.87[CHB][hapmap]
rs12623466	0.86[CHB][hapmap]
rs12691562	0.83[CHB][hapmap]
rs12691571	0.86[CHB][hapmap]
rs1429333	0.86[CHB][hapmap]
rs1429369	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17514829	0.83[CHB][hapmap]
rs17515498	0.86[CHB][hapmap]
rs17515899	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1843585	0.83[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs1963394	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2171173	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2380889	0.87[CHB][hapmap]
rs2380893	0.83[CEU][hapmap]
rs3828265	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4423546	0.86[CHB][hapmap]
rs4616417	0.87[CHB][hapmap]
rs4954860	0.82[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes]
rs61670185	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62173623	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62173624	0.83[AMR][1000 genomes]
rs6720709	0.87[CHB][hapmap]
rs6720793	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6735489	0.81[CHB][hapmap]
rs6749275	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6749707	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7571628	0.86[CHB][hapmap]
rs7571766	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7578679	0.87[CHB][hapmap]
rs9287300	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2066444	chr2:141600444-141600863	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141600400-141600800	Enhancers	Primary T cells from cord blood	blood

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