Variant report

Variant	rs17518932
Chromosome Location	chr10:96204219-96204220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:96039567..96040509-chr10:96203701..96204746,3	MCF-7	breast:
2	chr10:96202589..96204461-chr10:96236936..96238924,2	MCF-7	breast:
3	chr10:96108843..96109765-chr10:96203803..96204625,2	MCF-7	breast:
4	chr10:96039528..96040501-chr10:96203793..96204717,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71482306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17518932	NOC3L	cis	parietal	SCAN
rs17518932	BLNK	cis	cerebellum	SCAN
rs17518932	DNTT	cis	cerebellum	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
5	chr10:96199200-96211200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
7	chr10:96199400-96207000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:96199400-96211200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:96199400-96211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:96199400-96211400	Weak transcription	Psoas Muscle	Psoas
11	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
13	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
14	chr10:96200200-96211400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:96200200-96219400	Weak transcription	Left Ventricle	heart
16	chr10:96200600-96211200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:96201200-96219200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:96202400-96210000	Weak transcription	Fetal Lung	lung
19	chr10:96203000-96205400	Weak transcription	HSMMtube	muscle
20	chr10:96203000-96205600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:96203000-96218600	Weak transcription	Ovary	ovary
22	chr10:96203000-96239600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:96203200-96215400	Weak transcription	Fetal Intestine Small	intestine
24	chr10:96203400-96212000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:96203400-96242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:96203600-96205800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:96203600-96205800	Weak transcription	HSMM	muscle
28	chr10:96203600-96206600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:96203600-96211400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:96203600-96218400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:96203800-96211200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:96203800-96211200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:96203800-96211400	Weak transcription	Brain Substantia Nigra	brain
34	chr10:96203800-96217200	Weak transcription	HepG2	liver
35	chr10:96203800-96219600	Weak transcription	Brain Angular Gyrus	brain
36	chr10:96204000-96221000	Weak transcription	Liver	Liver
37	chr10:96204200-96205600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:96204200-96210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:96204200-96211200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:96204200-96212000	Weak transcription	Brain Anterior Caudate	brain
41	chr10:96204200-96213400	Weak transcription	A549	lung
42	chr10:96204200-96243400	Weak transcription	Stomach Smooth Muscle	stomach

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