Variant report

Variant	rs17520
Chromosome Location	chr8:110002080-110002081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10505127	0.88[ASN][1000 genomes]
rs12156210	0.88[ASN][1000 genomes]
rs12375395	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12543195	0.88[ASN][1000 genomes]
rs12543567	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545538	0.88[ASN][1000 genomes]
rs12550701	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12679431	0.88[ASN][1000 genomes]
rs13251349	0.88[ASN][1000 genomes]
rs13256422	0.88[ASN][1000 genomes]
rs13269540	0.88[ASN][1000 genomes]
rs13274272	0.88[ASN][1000 genomes]
rs13274565	0.88[ASN][1000 genomes]
rs13274898	0.88[ASN][1000 genomes]
rs34080186	0.81[ASN][1000 genomes]
rs4236795	0.90[EUR][1000 genomes]
rs4236798	0.88[ASN][1000 genomes]
rs4236799	0.95[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4236800	0.86[ASN][1000 genomes]
rs4276659	0.88[ASN][1000 genomes]
rs4292662	0.88[ASN][1000 genomes]
rs4292663	0.87[ASN][1000 genomes]
rs4316127	0.87[ASN][1000 genomes]
rs4319061	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4349964	0.86[ASN][1000 genomes]
rs4370503	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4428649	0.88[ASN][1000 genomes]
rs4442116	0.88[ASN][1000 genomes]
rs4457304	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4464938	0.88[ASN][1000 genomes]
rs4469428	0.86[ASN][1000 genomes]
rs4480098	0.88[ASN][1000 genomes]
rs4484661	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4510830	0.88[ASN][1000 genomes]
rs4531025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4538846	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4556069	0.88[ASN][1000 genomes]
rs4557674	0.88[ASN][1000 genomes]
rs4567008	0.88[ASN][1000 genomes]
rs4577927	0.88[ASN][1000 genomes]
rs4579501	0.87[ASN][1000 genomes]
rs4585725	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4620260	0.80[ASN][1000 genomes]
rs4631432	0.80[ASN][1000 genomes]
rs4645537	0.88[ASN][1000 genomes]
rs4645538	0.85[ASN][1000 genomes]
rs4734187	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734188	0.88[ASN][1000 genomes]
rs4734189	0.87[ASN][1000 genomes]
rs4735082	0.88[ASN][1000 genomes]
rs4735083	0.88[ASN][1000 genomes]
rs4735084	0.88[ASN][1000 genomes]
rs4735090	0.83[ASN][1000 genomes]
rs61634458	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6469215	0.88[ASN][1000 genomes]
rs6469216	0.88[ASN][1000 genomes]
rs6469217	0.88[ASN][1000 genomes]
rs6469219	0.88[ASN][1000 genomes]
rs6469220	0.87[ASN][1000 genomes]
rs6469221	0.88[ASN][1000 genomes]
rs6469223	0.81[ASN][1000 genomes]
rs6469224	0.88[ASN][1000 genomes]
rs6469227	0.88[ASN][1000 genomes]
rs6981930	0.88[ASN][1000 genomes]
rs6982425	0.88[ASN][1000 genomes]
rs6987636	0.88[ASN][1000 genomes]
rs6990759	0.80[ASN][1000 genomes]
rs7001089	0.88[ASN][1000 genomes]
rs7004855	0.88[ASN][1000 genomes]
rs7006400	0.88[ASN][1000 genomes]
rs7007614	0.88[ASN][1000 genomes]
rs7007733	0.87[ASN][1000 genomes]
rs7007742	0.88[ASN][1000 genomes]
rs7010190	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7012445	0.88[ASN][1000 genomes]
rs7012614	0.88[ASN][1000 genomes]
rs7463680	0.88[ASN][1000 genomes]
rs7465417	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7814973	0.86[ASN][1000 genomes]
rs7816859	0.88[ASN][1000 genomes]
rs7817014	0.96[EUR][1000 genomes]
rs7817020	0.87[ASN][1000 genomes]
rs7817222	0.87[ASN][1000 genomes]
rs7818891	0.83[ASN][1000 genomes]
rs7827721	0.88[ASN][1000 genomes]
rs7830847	0.88[ASN][1000 genomes]
rs7834396	0.88[ASN][1000 genomes]
rs9643041	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643042	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9643043	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891270	chr8:109894098-110010721	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17520	SYBU	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110001200-110002200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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