Variant report

Variant	rs17520547
Chromosome Location	chr1:84248333-84248334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11802417	0.88[EUR][1000 genomes]
rs1983637	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66888837	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524397	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17520547	FKBP10	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84243000-84249600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:84245200-84252200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:84245200-84252200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:84245200-84253400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:84248200-84252600	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links