Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12190643	0.87[JPT][hapmap]
rs16883494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282448	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2350381	0.83[ASN][1000 genomes]
rs2350751	0.91[ASN][1000 genomes]
rs2350753	0.88[CHB][hapmap]
rs4349773	1.00[CEU][hapmap]
rs4706526	1.00[CEU][hapmap]
rs56144603	0.89[ASN][1000 genomes]
rs56956976	0.83[ASN][1000 genomes]
rs57535819	0.97[ASN][1000 genomes]
rs6453652	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6453656	0.82[JPT][hapmap]
rs6453657	0.82[JPT][hapmap]
rs72942627	0.89[ASN][1000 genomes]
rs72942634	0.89[ASN][1000 genomes]
rs72948831	0.99[ASN][1000 genomes]
rs72948835	1.00[ASN][1000 genomes]
rs72948836	0.99[ASN][1000 genomes]
rs72948839	0.99[ASN][1000 genomes]
rs72950823	0.89[ASN][1000 genomes]
rs7759143	0.89[ASN][1000 genomes]
rs9341400	1.00[CEU][hapmap]
rs9350480	1.00[CEU][hapmap]
rs9350482	1.00[CEU][hapmap]
rs9351965	1.00[CEU][hapmap]
rs9688431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73869000-73904200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73884800-73903600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73887600-73903600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73890800-73904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73890800-73904200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73890800-73904400	Weak transcription	Aorta	Aorta
7	chr6:73891000-73900600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73891000-73901000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:73891000-73903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:73891000-73909600	Weak transcription	HSMMtube	muscle
11	chr6:73891200-73904400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:73892000-73904800	Weak transcription	GM12878-XiMat	blood
13	chr6:73893200-73904400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:73893400-73904200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:73898200-73900000	Weak transcription	Primary B cells from cord blood	blood

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