Variant report

Variant	rs17522625
Chromosome Location	chr7:7588594-7588595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7582529..7585016-chr7:7587079..7589582,2	K562	blood:
2	chr7:7588099..7594648-chr7:7604621..7611487,9	MCF-7	breast:
3	chr7:7588174..7592470-chr7:7605427..7608009,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272894	Chromatin interaction
ENSG00000164654	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10235484	0.87[EUR][1000 genomes]
rs10276699	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486184	0.83[AMR][1000 genomes]
rs11972066	0.86[EUR][1000 genomes]
rs11984435	0.86[EUR][1000 genomes]
rs12666084	0.86[EUR][1000 genomes]
rs12666106	0.86[EUR][1000 genomes]
rs12666212	0.86[EUR][1000 genomes]
rs12669035	0.86[EUR][1000 genomes]
rs12670328	0.86[EUR][1000 genomes]
rs12671201	0.86[EUR][1000 genomes]
rs12671418	0.86[EUR][1000 genomes]
rs12672583	0.86[EUR][1000 genomes]
rs17167726	0.86[EUR][1000 genomes]
rs17167748	0.86[EUR][1000 genomes]
rs17167774	0.86[EUR][1000 genomes]
rs17167927	0.86[EUR][1000 genomes]
rs17168704	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169036	0.83[AMR][1000 genomes]
rs17457863	0.86[EUR][1000 genomes]
rs17459718	0.86[EUR][1000 genomes]
rs17459836	0.86[EUR][1000 genomes]
rs17459995	0.86[EUR][1000 genomes]
rs17460037	0.86[EUR][1000 genomes]
rs17461022	0.86[EUR][1000 genomes]
rs17461446	0.86[EUR][1000 genomes]
rs17461474	0.86[EUR][1000 genomes]
rs17461538	0.86[EUR][1000 genomes]
rs17462749	0.86[EUR][1000 genomes]
rs17462946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17464197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17464497	1.00[AMR][1000 genomes]
rs17464517	1.00[AMR][1000 genomes]
rs17464585	1.00[AMR][1000 genomes]
rs17465493	1.00[AMR][1000 genomes]
rs17516587	0.86[EUR][1000 genomes]
rs17516628	0.86[EUR][1000 genomes]
rs17516739	0.86[EUR][1000 genomes]
rs17517530	0.86[EUR][1000 genomes]
rs17518933	0.86[EUR][1000 genomes]
rs17519339	0.86[EUR][1000 genomes]
rs17519423	0.86[EUR][1000 genomes]
rs17519676	0.86[EUR][1000 genomes]
rs17520004	0.86[EUR][1000 genomes]
rs17520619	0.86[EUR][1000 genomes]
rs17520689	0.86[EUR][1000 genomes]
rs17521499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521779	0.86[EUR][1000 genomes]
rs17521814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522036	0.86[EUR][1000 genomes]
rs17522077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522279	0.86[EUR][1000 genomes]
rs17522950	0.86[EUR][1000 genomes]
rs17523400	0.86[EUR][1000 genomes]
rs1860726	0.86[EUR][1000 genomes]
rs1922629	0.86[EUR][1000 genomes]
rs1978190	0.89[ASN][1000 genomes]
rs2191815	0.86[EUR][1000 genomes]
rs34330034	0.86[EUR][1000 genomes]
rs35473859	0.86[EUR][1000 genomes]
rs35772304	0.86[EUR][1000 genomes]
rs3757531	1.00[ASN][1000 genomes]
rs3757532	1.00[ASN][1000 genomes]
rs57076932	1.00[AFR][1000 genomes]
rs59392847	1.00[AFR][1000 genomes]
rs59510046	1.00[AFR][1000 genomes]
rs60654515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053241	1.00[AFR][1000 genomes]
rs6957976	1.00[ASN][1000 genomes]
rs6969871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73674556	0.86[EUR][1000 genomes]
rs7778775	0.83[AMR][1000 genomes]
rs7782178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv887473	chr7:7497676-7604913	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1027872	chr7:7516124-7600842	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1024107	chr7:7516124-7601638	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv887474	chr7:7519603-7679644	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
12	nsv887475	chr7:7519603-7679644	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv887476	chr7:7519603-7680697	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
15	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7575800-7593000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:7581800-7595800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:7582600-7589600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:7588000-7588600	Enhancers	Liver	Liver
5	chr7:7588000-7591200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:7588000-7592200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links