Variant report

Variant	rs17523470
Chromosome Location	chr2:111556523-111556524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12991206	0.85[AMR][1000 genomes]
rs12997497	0.85[AMR][1000 genomes]
rs34103565	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34466366	1.00[AFR][1000 genomes]
rs34661846	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35453655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71431126	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008758	chr2:111415136-111626467	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv535890	chr2:111415136-111626467	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv997829	chr2:111486961-111780537	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111531200-111566200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:111531600-111556800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:111531600-111558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:111552400-111557800	Weak transcription	Fetal Heart	heart
5	chr2:111552600-111567400	Weak transcription	Right Ventricle	heart
6	chr2:111553200-111556600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:111553400-111558200	Weak transcription	Left Ventricle	heart
8	chr2:111554800-111557400	Weak transcription	Placenta	Placenta
9	chr2:111554800-111558200	Weak transcription	Right Atrium	heart
10	chr2:111554800-111558600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr2:111554800-111562800	Weak transcription	Fetal Lung	lung
12	chr2:111555400-111557400	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:111555400-111558600	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:111555600-111558000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:111555800-111559400	Weak transcription	Fetal Brain Male	brain
16	chr2:111556000-111558200	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:111556000-111558600	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr2:111556200-111556600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:111556200-111558000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:111556200-111558800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr2:111556400-111557600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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