Variant report

Variant	rs17526034
Chromosome Location	chr22:29650987-29650988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29648630..29652956-chr22:29654339..29658530,6	K562	blood:
2	chr17:59586558..59588370-chr22:29650979..29652904,2	MCF-7	breast:
3	chr22:29605515..29607665-chr22:29648338..29651149,2	K562	blood:

Variant related genes	Relation type
ENSG00000237015	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13055379	1.00[AFR][1000 genomes]
rs2009159	0.85[EUR][1000 genomes]
rs3765303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4547624	0.84[EUR][1000 genomes]
rs73156512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv1809952	chr22:29595349-29661434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv829154	chr22:29617485-29724001	Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv834171	chr22:29626402-29829844	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv519651	chr22:29650905-29650993	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29622000-29655200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr22:29622000-29655800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr22:29622400-29656600	Weak transcription	Colonic Mucosa	Colon
4	chr22:29629000-29659400	Weak transcription	Brain Anterior Caudate	brain
5	chr22:29629600-29655400	Weak transcription	Liver	Liver
6	chr22:29629600-29655400	Weak transcription	Gastric	stomach
7	chr22:29633600-29654400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr22:29634600-29655200	Weak transcription	Brain Angular Gyrus	brain
9	chr22:29638400-29655200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr22:29639000-29655200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr22:29639400-29654200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr22:29639800-29656400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr22:29640400-29651200	Weak transcription	Lung	lung
14	chr22:29641600-29655600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr22:29641600-29659800	Weak transcription	Ovary	ovary
16	chr22:29641600-29661800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr22:29641800-29657800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr22:29642000-29659600	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:29642200-29651200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr22:29642200-29659800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr22:29642600-29662400	Strong transcription	Fetal Intestine Small	intestine
22	chr22:29643600-29653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:29643600-29660400	Weak transcription	Fetal Kidney	kidney
24	chr22:29644600-29659800	Weak transcription	Brain Substantia Nigra	brain
25	chr22:29647400-29662000	Strong transcription	Fetal Stomach	stomach
26	chr22:29647600-29651800	Strong transcription	Primary hematopoietic stem cells	blood
27	chr22:29648000-29653800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr22:29648400-29653600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr22:29648400-29657400	Strong transcription	Fetal Intestine Large	intestine
30	chr22:29648800-29655400	Weak transcription	Brain Hippocampus Middle	brain
31	chr22:29649000-29654000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr22:29649000-29662400	Weak transcription	Fetal Brain Male	brain
33	chr22:29649600-29652800	Strong transcription	Fetal Lung	lung
34	chr22:29649800-29651000	Enhancers	HepG2	liver
35	chr22:29649800-29651200	Enhancers	Fetal Thymus	thymus
36	chr22:29649800-29651200	Enhancers	Thymus	Thymus
37	chr22:29649800-29651600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr22:29649800-29651800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr22:29649800-29655200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr22:29649800-29656000	Strong transcription	Spleen	Spleen
41	chr22:29649800-29657400	Strong transcription	Fetal Brain Female	brain
42	chr22:29650000-29655000	Weak transcription	Esophagus	oesophagus
43	chr22:29650200-29652000	Strong transcription	Fetal Muscle Leg	muscle
44	chr22:29650200-29653800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr22:29650200-29653800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr22:29650200-29654600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr22:29650200-29655400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr22:29650200-29655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr22:29650200-29657200	Strong transcription	Brain Germinal Matrix	brain
50	chr22:29650200-29662600	Weak transcription	Stomach Mucosa	stomach

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