The 2.0 version of rSNPBase

Variant report

Variant rs17535213
Chromosome Location chr12:44128391-44128392
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:44111000-44129400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr12:44111800-44129400 Weak transcription Pancreas Pancrea
3 chr12:44112400-44129400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr12:44114000-44129400 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr12:44114000-44130000 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr12:44114400-44129600 Weak transcription Brain Hippocampus Middle brain
7 chr12:44115200-44130200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr12:44117000-44138000 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr12:44117200-44129600 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr12:44117400-44151400 Weak transcription Brain Substantia Nigra brain
11 chr12:44117600-44128800 Weak transcription Fetal Intestine Small intestine
12 chr12:44117800-44136000 Weak transcription A549 lung
13 chr12:44117800-44144600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr12:44118200-44128800 Weak transcription Fetal Stomach stomach
15 chr12:44118200-44130400 Weak transcription NHLF lung
16 chr12:44119000-44128400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr12:44119400-44146000 Weak transcription Aorta Aorta
18 chr12:44119800-44138200 Weak transcription Fetal Lung lung
19 chr12:44119800-44146000 Weak transcription Fetal Brain Female brain
20 chr12:44119800-44147000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr12:44120000-44129400 Weak transcription Fetal Muscle Trunk muscle
22 chr12:44120000-44129400 Weak transcription Stomach Smooth Muscle stomach
23 chr12:44120000-44151600 Weak transcription Gastric stomach
24 chr12:44120200-44151600 Weak transcription Lung lung
25 chr12:44121200-44129600 Weak transcription Ovary ovary
26 chr12:44121800-44130200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr12:44122000-44147400 Weak transcription Psoas Muscle Psoas
28 chr12:44122200-44129800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr12:44122400-44129600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr12:44122600-44128400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr12:44122600-44129200 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr12:44122600-44131800 Strong transcription Primary hematopoietic stem cells blood
33 chr12:44122600-44139800 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr12:44122600-44147400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr12:44122600-44152000 Weak transcription Left Ventricle heart
36 chr12:44122800-44128400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr12:44122800-44129800 Weak transcription HepG2 liver
38 chr12:44122800-44130200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
39 chr12:44122800-44130200 Strong transcription Osteobl bone
40 chr12:44122800-44135800 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr12:44122800-44138600 Weak transcription Brain Germinal Matrix brain
42 chr12:44122800-44151000 Weak transcription Fetal Brain Male brain
43 chr12:44123400-44130200 Weak transcription Fetal Kidney kidney
44 chr12:44123400-44151600 Weak transcription Brain Cingulate Gyrus brain
45 chr12:44123600-44151400 Weak transcription Placenta Amnion Placenta Amnion
46 chr12:44123800-44129400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr12:44124000-44132200 Strong transcription Primary B cells from cord blood blood
48 chr12:44124200-44128400 Strong transcription Primary T cells from cord blood blood
49 chr12:44124200-44132200 Strong transcription Rectal Mucosa Donor 29 rectum
50 chr12:44124400-44130200 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015