Variant report

Variant	rs17535312
Chromosome Location	chr1:84426646-84426647
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84401511..84403535-chr1:84426504..84429096,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12128677	1.00[ASN][1000 genomes]
rs12129768	1.00[ASN][1000 genomes]
rs12139683	1.00[ASN][1000 genomes]
rs12144770	1.00[ASN][1000 genomes]
rs2684910	1.00[ASN][1000 genomes]
rs6661411	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84368400-84428400	Weak transcription	Pancreas	Pancrea
2	chr1:84399200-84429800	Weak transcription	HSMMtube	muscle
3	chr1:84403600-84427400	Weak transcription	Fetal Brain Female	brain
4	chr1:84410400-84428000	Weak transcription	Brain Germinal Matrix	brain
5	chr1:84416400-84428400	Weak transcription	Aorta	Aorta
6	chr1:84416800-84436400	Weak transcription	Psoas Muscle	Psoas
7	chr1:84420400-84435800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:84422400-84427000	Enhancers	Brain Hippocampus Middle	brain
9	chr1:84423600-84428200	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:84424600-84427600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:84424600-84427800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:84424800-84429000	Enhancers	Brain Substantia Nigra	brain
13	chr1:84425000-84426800	Enhancers	NHDF-Ad	bronchial
14	chr1:84425200-84433000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:84425200-84453200	Weak transcription	NHLF	lung
16	chr1:84425600-84427200	Enhancers	Brain Angular Gyrus	brain
17	chr1:84425800-84427800	Enhancers	HSMM	muscle
18	chr1:84426000-84426800	Enhancers	Adipose Nuclei	Adipose
19	chr1:84426200-84426800	Enhancers	Stomach Smooth Muscle	stomach
20	chr1:84426200-84427000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:84426200-84427400	Enhancers	Stomach Mucosa	stomach
22	chr1:84426200-84452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:84426400-84426800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:84426400-84426800	Enhancers	Ovary	ovary
25	chr1:84426400-84426800	Enhancers	Right Atrium	heart
26	chr1:84426400-84427400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:84426400-84427400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:84426400-84428600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:84426400-84430000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:84426600-84427000	Weak transcription	Brain Anterior Caudate	brain
31	chr1:84426600-84431600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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