Variant report

Variant	rs17536090
Chromosome Location	chr18:25670297-25670298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17493814	1.00[YRI][hapmap]
rs17495084	1.00[YRI][hapmap]
rs17495167	1.00[YRI][hapmap]
rs17522333	1.00[YRI][hapmap]
rs17522471	1.00[YRI][hapmap]
rs17522701	1.00[YRI][hapmap]
rs17535622	1.00[YRI][hapmap]
rs17535692	1.00[YRI][hapmap]
rs17536549	1.00[YRI][hapmap]
rs17536626	1.00[YRI][hapmap]
rs17536717	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart
3	chr18:25666400-25671000	Enhancers	HepG2	liver
4	chr18:25667400-25670400	Weak transcription	Gastric	stomach
5	chr18:25667400-25671200	Enhancers	Liver	Liver
6	chr18:25667400-25672400	Enhancers	Fetal Heart	heart
7	chr18:25667600-25670400	Enhancers	Brain Germinal Matrix	brain
8	chr18:25667600-25670400	Weak transcription	Right Atrium	heart
9	chr18:25667600-25672200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr18:25668000-25671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr18:25668000-25680200	Weak transcription	HSMM	muscle
12	chr18:25668200-25670600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:25668200-25688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:25668400-25670800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:25668800-25670800	Weak transcription	Brain Angular Gyrus	brain
16	chr18:25668800-25671200	Weak transcription	Osteobl	bone
17	chr18:25668800-25671800	Weak transcription	Brain Substantia Nigra	brain
18	chr18:25668800-25671800	Weak transcription	Right Ventricle	heart
19	chr18:25668800-25672000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:25669000-25674800	Weak transcription	NH-A	brain
21	chr18:25669600-25670400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:25669800-25670600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:25669800-25670800	Enhancers	A549	lung
24	chr18:25669800-25671600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:25669800-25671800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr18:25669800-25672000	Enhancers	Fetal Intestine Small	intestine
27	chr18:25669800-25676000	Weak transcription	Fetal Brain Female	brain
28	chr18:25670000-25675000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr18:25670000-25677000	Weak transcription	Fetal Brain Male	brain
30	chr18:25670200-25670600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr18:25670200-25670600	Enhancers	Pancreas	Pancrea
32	chr18:25670200-25671000	Enhancers	Fetal Intestine Large	intestine

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