Variant report

Variant	rs17537831
Chromosome Location	chr7:40036460-40036461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:40031268..40032823-chr7:40035953..40037510,2	MCF-7	breast:
2	chr7:39995562..39997587-chr7:40034318..40036710,2	MCF-7	breast:
3	chr7:39986663..39989008-chr7:40035472..40037902,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10228050	1.00[EUR][1000 genomes]
rs10236585	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241287	1.00[EUR][1000 genomes]
rs10241835	1.00[EUR][1000 genomes]
rs10244506	1.00[EUR][1000 genomes]
rs10256280	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256385	1.00[EUR][1000 genomes]
rs10257242	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10258115	1.00[EUR][1000 genomes]
rs10259564	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10267751	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270724	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271401	1.00[EUR][1000 genomes]
rs10275367	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1060299	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17171630	1.00[EUR][1000 genomes]
rs17171636	0.84[AFR][1000 genomes]
rs17171639	1.00[EUR][1000 genomes]
rs17171643	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17171644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17171648	1.00[EUR][1000 genomes]
rs17171649	1.00[EUR][1000 genomes]
rs17496395	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17538020	1.00[EUR][1000 genomes]
rs28374865	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28714188	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28823992	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56885787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56890877	1.00[EUR][1000 genomes]
rs57300694	1.00[EUR][1000 genomes]
rs57667402	1.00[EUR][1000 genomes]
rs57765448	1.00[EUR][1000 genomes]
rs58787667	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59146346	1.00[EUR][1000 genomes]
rs59537889	1.00[EUR][1000 genomes]
rs59749446	1.00[EUR][1000 genomes]
rs60101070	1.00[EUR][1000 genomes]
rs60615872	1.00[EUR][1000 genomes]
rs60806836	1.00[EUR][1000 genomes]
rs61635237	1.00[EUR][1000 genomes]
rs6462957	1.00[EUR][1000 genomes]
rs6462958	1.00[EUR][1000 genomes]
rs6462960	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6946176	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6953989	1.00[EUR][1000 genomes]
rs6955589	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6958792	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6964473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6965022	1.00[EUR][1000 genomes]
rs6973262	1.00[EUR][1000 genomes]
rs6976377	1.00[EUR][1000 genomes]
rs73381425	1.00[EUR][1000 genomes]
rs73381435	1.00[EUR][1000 genomes]
rs73381438	1.00[EUR][1000 genomes]
rs73381440	1.00[EUR][1000 genomes]
rs73381453	1.00[EUR][1000 genomes]
rs73392755	0.83[AFR][1000 genomes]
rs73392765	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7794028	1.00[EUR][1000 genomes]
rs7809754	1.00[EUR][1000 genomes]
rs9655408	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv1015322	chr7:40006195-40141195	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2761319	chr7:40006195-40142139	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv464436	chr7:40018693-40133044	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv606706	chr7:40018693-40133044	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv606707	chr7:40021044-40133044	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv606708	chr7:40021044-40157040	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv887978	chr7:40030488-40124137	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39993600-40048200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:39995200-40042600	Weak transcription	K562	blood
3	chr7:40018600-40047800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:40020000-40037400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr7:40020400-40077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:40023400-40046800	Weak transcription	HMEC	breast
7	chr7:40023800-40043200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:40025600-40037200	Weak transcription	Fetal Lung	lung
9	chr7:40025600-40042600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:40025600-40046800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:40025600-40055400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:40025800-40039600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:40025800-40043200	Weak transcription	Left Ventricle	heart
14	chr7:40025800-40054800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:40025800-40055400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:40025800-40055400	Weak transcription	Fetal Heart	heart
17	chr7:40025800-40055400	Weak transcription	Stomach Mucosa	stomach
18	chr7:40025800-40059600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:40025800-40062800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:40025800-40082200	Weak transcription	Spleen	Spleen
21	chr7:40026000-40071200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:40026400-40036800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr7:40026600-40096800	Weak transcription	Right Ventricle	heart
24	chr7:40027400-40045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:40027600-40042000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:40027600-40042400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:40027600-40042400	Weak transcription	Esophagus	oesophagus
28	chr7:40027600-40043200	Weak transcription	Pancreas	Pancrea
29	chr7:40027800-40042200	Weak transcription	Osteobl	bone
30	chr7:40027800-40047400	Weak transcription	Fetal Kidney	kidney
31	chr7:40027800-40047600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:40027800-40047800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:40027800-40048400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:40027800-40049600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:40027800-40053800	Weak transcription	HepG2	liver
36	chr7:40027800-40054800	Weak transcription	Aorta	Aorta
37	chr7:40027800-40055400	Weak transcription	Fetal Brain Female	brain
38	chr7:40028000-40037000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:40028000-40037000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr7:40028000-40037200	Weak transcription	Primary T cells from cord blood	blood
41	chr7:40028000-40038600	Weak transcription	HUVEC	blood vessel
42	chr7:40028000-40039000	Weak transcription	Liver	Liver
43	chr7:40028000-40039600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:40028000-40040200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:40028000-40042400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:40028000-40042400	Weak transcription	Fetal Intestine Large	intestine
47	chr7:40028000-40042800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:40028000-40043000	Weak transcription	NHEK	skin
49	chr7:40028000-40047400	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:40028000-40047400	Weak transcription	HSMMtube	muscle

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