Variant report

Variant	rs17539853
Chromosome Location	chr1:223531940-223531941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12120297	0.84[EUR][1000 genomes]
rs1618537	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223514400-223535800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:223526600-223534000	Weak transcription	Primary T cells from cord blood	blood
3	chr1:223528000-223535000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:223528000-223536400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:223530000-223532000	Weak transcription	NHEK	skin
6	chr1:223530200-223532200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr1:223530600-223532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:223530600-223533600	Weak transcription	Esophagus	oesophagus
9	chr1:223531200-223536400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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