Variant report

Variant	rs17540648
Chromosome Location	chr9:92679571-92679572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72752987	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92678800-92679600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:92678800-92679600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:92678800-92679600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:92678800-92679800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:92678800-92680000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:92679000-92679600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:92679000-92679600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:92679000-92679600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:92679000-92679600	Enhancers	HSMMtube	muscle
10	chr9:92679000-92679800	Enhancers	HSMM	muscle
11	chr9:92679000-92680000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:92679000-92680600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr9:92679000-92683000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:92679000-92684000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:92679200-92679800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:92679400-92679600	Enhancers	Fetal Muscle Trunk	muscle
17	chr9:92679400-92681200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:92679400-92681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:92679400-92681800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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