Variant report

Variant	rs17542770
Chromosome Location	chr4:111193973-111193974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17620645	0.83[AFR][1000 genomes]
rs2713949	1.00[ASW][hapmap];0.91[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111190600-111194200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:111192000-111194600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:111192400-111194600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:111192600-111197000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:111192800-111194200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:111192800-111196400	Weak transcription	NH-A	brain
7	chr4:111192800-111196800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:111193400-111194600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:111193400-111196800	Weak transcription	Osteobl	bone
10	chr4:111193400-111197000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:111193400-111197000	Weak transcription	HSMM	muscle
12	chr4:111193800-111197000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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