Variant report

Variant	rs17543303
Chromosome Location	chr5:17171061-17171062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17543358	1.00[ASN][1000 genomes]
rs36125381	1.00[ASN][1000 genomes]
rs73052866	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1026025	chr5:17039665-17195440	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17155200-17181200	Weak transcription	Hela-S3	cervix
2	chr5:17161200-17186400	Weak transcription	Fetal Brain Female	brain
3	chr5:17167600-17171200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:17167600-17173000	Weak transcription	Fetal Brain Male	brain
5	chr5:17167800-17180600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:17168000-17172600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:17168000-17185600	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:17168000-17186400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:17168200-17171200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:17169000-17171200	Enhancers	Adipose Nuclei	Adipose
11	chr5:17169600-17171200	Enhancers	Fetal Stomach	stomach
12	chr5:17169800-17171200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:17170000-17171200	Enhancers	Fetal Lung	lung
14	chr5:17170000-17171400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:17170000-17171400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:17170000-17171400	Enhancers	HUVEC	blood vessel
17	chr5:17170000-17177600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:17170000-17178400	Weak transcription	A549	lung
19	chr5:17170200-17178400	Weak transcription	HSMM	muscle
20	chr5:17170200-17180600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:17170400-17177000	Weak transcription	Placenta	Placenta
22	chr5:17171000-17172600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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