Variant report

Variant	rs1754358
Chromosome Location	chr1:174756528-174756529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1618234	0.89[AFR][1000 genomes]
rs1653631	0.90[AFR][1000 genomes]
rs1653633	0.91[AFR][1000 genomes]
rs16847457	0.80[AFR][1000 genomes]
rs1754356	0.88[AFR][1000 genomes]
rs2116515	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv548198	chr1:174731596-174800872	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174745000-174756800	Weak transcription	HSMMtube	muscle
2	chr1:174747000-174768400	Weak transcription	Primary B cells from cord blood	blood
3	chr1:174752000-174757800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:174752400-174760800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:174752400-174764000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:174752400-174764200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:174752600-174757000	Weak transcription	K562	blood
8	chr1:174753200-174756800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:174753600-174758400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:174754800-174757000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:174755000-174756600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:174755000-174757000	Weak transcription	Osteobl	bone
13	chr1:174755000-174757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:174755000-174757800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:174755200-174757600	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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