Variant report

Variant	rs17544103
Chromosome Location	chr4:20619890-20619891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17543924	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases
2	nsv1013077	chr4:20599841-20732558	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20589200-20620800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:20590000-20620400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:20594800-20620600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:20597800-20624600	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:20615200-20620400	Weak transcription	Gastric	stomach
6	chr4:20616600-20620400	Weak transcription	Fetal Brain Male	brain
7	chr4:20616800-20620600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:20617000-20620600	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:20617000-20623200	Genic enhancers	Fetal Lung	lung
10	chr4:20617200-20621000	Enhancers	Fetal Intestine Small	intestine
11	chr4:20617600-20620200	Weak transcription	Aorta	Aorta
12	chr4:20617600-20620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:20617600-20620600	Enhancers	Colon Smooth Muscle	Colon
14	chr4:20617800-20620000	Weak transcription	NH-A	brain
15	chr4:20618000-20620000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:20618000-20620200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:20618000-20622800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:20618000-20622800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:20618000-20626400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:20618200-20623400	Strong transcription	NHDF-Ad	bronchial
21	chr4:20618200-20625800	Weak transcription	NHEK	skin
22	chr4:20618400-20621000	Enhancers	Adipose Nuclei	Adipose
23	chr4:20618600-20620000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:20618600-20620000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr4:20618600-20620000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr4:20618800-20620400	Weak transcription	Colonic Mucosa	Colon
27	chr4:20618800-20627800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:20619000-20620000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr4:20619000-20620200	Enhancers	Spleen	Spleen
30	chr4:20619000-20620400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:20619000-20620400	Enhancers	Duodenum Mucosa	Duodenum
32	chr4:20619000-20620400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr4:20619000-20620600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:20619000-20620800	Enhancers	Fetal Kidney	kidney
35	chr4:20619000-20621000	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr4:20619000-20622000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:20619200-20620400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:20619200-20620400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:20619200-20621000	Enhancers	Ovary	ovary
40	chr4:20619200-20621200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr4:20619200-20621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr4:20619200-20622200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr4:20619400-20620200	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr4:20619400-20620200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr4:20619400-20620400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:20619400-20620400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:20619400-20620600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:20619400-20620600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:20619400-20620600	Enhancers	Brain Germinal Matrix	brain
50	chr4:20619400-20620600	Enhancers	Fetal Intestine Large	intestine

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