Variant report

Variant	rs17547813
Chromosome Location	chr17:33565966-33565967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr17:33565779-33566284	SK-N-SH	brain:	n/a	n/a
2	FOS	chr17:33565837-33566245	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr17:33565934-33566216	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr17:33565798-33566247	MCF10A-Er-Src	breast:	n/a	chr17:33565818-33565826
5	FOS	chr17:33565846-33566258	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr17:33565856-33566247	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr17:33565738-33566247	MCF10A-Er-Src	breast:	n/a	chr17:33565818-33565826
8	E2F4	chr17:33565872-33566245	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr17:33565918-33566257	MCF10A-Er-Src	breast:	n/a	n/a
10	PBX3	chr17:33565843-33566290	SK-N-SH	brain:	n/a	n/a
11	CEBPB	chr17:33565921-33566266	IMR90	lung:	n/a	n/a
12	STAT3	chr17:33565898-33566247	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr17:33565830-33566247	MCF10A-Er-Src	breast:	n/a	n/a
14	MYC	chr17:33565927-33566166	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr17:33565914-33566220	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:33563660..33566438-chr17:33569063..33571536,3	MCF-7	breast:
2	chr17:33565547..33567820-chr17:33569597..33571539,2	K562	blood:
3	chr17:33565132..33567507-chr17:33568550..33571356,4	K562	blood:
4	chr17:33565047..33567179-chr5:172755795..172757478,2	MCF-7	breast:

Variant related genes	Relation type
SLFN5	TF binding region
ENSG00000266947	TF binding region
ENSG00000113739	Chromatin interaction
ENSG00000266947	Chromatin interaction
ENSG00000166750	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17548645	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	esv2422399	chr17:33539240-33618601	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33561000-33567200	Weak transcription	Spleen	Spleen
2	chr17:33562200-33567200	Enhancers	Fetal Thymus	thymus
3	chr17:33562400-33567000	Enhancers	Thymus	Thymus
4	chr17:33563000-33567000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr17:33563200-33566000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr17:33563200-33567200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:33563400-33568800	Weak transcription	Gastric	stomach
8	chr17:33563800-33567400	Enhancers	HMEC	breast
9	chr17:33564000-33568800	Weak transcription	Right Ventricle	heart
10	chr17:33564200-33566600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr17:33564400-33567400	Enhancers	NHEK	skin
12	chr17:33564600-33566800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr17:33564800-33567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:33564800-33567400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr17:33564800-33568600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr17:33564800-33568600	Weak transcription	Aorta	Aorta
17	chr17:33564800-33568800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr17:33565000-33566200	Weak transcription	HSMMtube	muscle
19	chr17:33565000-33567200	Weak transcription	Hela-S3	cervix
20	chr17:33565400-33566000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:33565400-33566600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:33565600-33566600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr17:33565600-33566600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr17:33565600-33566600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr17:33565600-33566600	Enhancers	NHDF-Ad	bronchial
26	chr17:33565600-33566600	Enhancers	NHLF	lung
27	chr17:33565600-33566800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:33565600-33566800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr17:33565600-33566800	Enhancers	Osteobl	bone
30	chr17:33565600-33567600	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr17:33565600-33567800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr17:33565800-33566000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:33565800-33566200	Active TSS	Primary T cells fromperipheralblood	blood
34	chr17:33565800-33566400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:33565800-33566600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr17:33565800-33566600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr17:33565800-33566600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr17:33565800-33566800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr17:33565800-33567200	Enhancers	A549	lung
40	chr17:33565800-33567400	Enhancers	HSMM	muscle

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