Variant report

Variant	rs17548611
Chromosome Location	chr7:147826339-147826340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10485839	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17483113	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17548646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17548680	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17548708	0.92[EUR][1000 genomes]
rs56253338	0.96[EUR][1000 genomes]
rs59230943	0.82[EUR][1000 genomes]
rs73744756	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813148	chr7:147796154-147837213	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147813600-147830800	Weak transcription	Brain Angular Gyrus	brain
2	chr7:147826200-147826600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:147826200-147826600	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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