Variant report

Variant	rs17549947
Chromosome Location	chr17:33817688-33817689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8072477	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17549947	NAALAD2	trans	parietal	SCAN
rs17549947	EFCAB5	cis	cerebellum	SCAN
rs17549947	SLFN13	cis	cerebellum	SCAN
rs17549947	FLOT2	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33812800-33820400	Strong transcription	Dnd41	blood
2	chr17:33815000-33820000	Weak transcription	Gastric	stomach
3	chr17:33815400-33817800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:33815600-33817800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:33815800-33826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:33816000-33826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr17:33816200-33820000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr17:33816400-33820600	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr17:33816400-33821600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:33816600-33818000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:33816600-33818200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr17:33816600-33818600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:33816600-33819800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:33816800-33820000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:33817000-33819400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:33817000-33819600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:33817200-33818000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr17:33817400-33818200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr17:33817600-33820000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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