Variant report

Variant	rs17551126
Chromosome Location	chr5:167754380-167754381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72838315	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv5119	chr5:167724987-167766076	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167744600-167757800	Weak transcription	Lung	lung
2	chr5:167745000-167756000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167748000-167755000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:167751200-167756800	Enhancers	Placenta	Placenta
5	chr5:167751400-167755200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:167751400-167755400	Enhancers	HMEC	breast
7	chr5:167751600-167754400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:167751800-167755600	Enhancers	NHDF-Ad	bronchial
9	chr5:167751800-167757200	Enhancers	Liver	Liver
10	chr5:167752000-167755200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:167752000-167756800	Enhancers	NH-A	brain
12	chr5:167752200-167754800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:167752400-167754400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:167752400-167754800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:167752400-167754800	Weak transcription	Fetal Intestine Large	intestine
16	chr5:167752400-167755000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr5:167752400-167755000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:167752400-167755200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:167752400-167755400	Weak transcription	Colonic Mucosa	Colon
20	chr5:167752600-167754400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:167752600-167754400	Weak transcription	Pancreas	Pancrea
22	chr5:167752600-167755000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr5:167752600-167755000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:167752600-167755200	Weak transcription	Stomach Mucosa	stomach
25	chr5:167752600-167755200	Enhancers	NHEK	skin
26	chr5:167752600-167755400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr5:167752600-167755600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:167752600-167755800	Enhancers	Hela-S3	cervix
29	chr5:167752600-167756600	Weak transcription	HSMM	muscle
30	chr5:167752600-167773000	Weak transcription	Esophagus	oesophagus
31	chr5:167753200-167756200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:167753200-167757200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr5:167753400-167756600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:167753600-167755400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:167753600-167758600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr5:167753800-167754400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:167753800-167756200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr5:167753800-167756400	Enhancers	Osteobl	bone
39	chr5:167754000-167754600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:167754000-167754600	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr5:167754000-167755400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:167754000-167755400	Enhancers	HepG2	liver
43	chr5:167754000-167755800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr5:167754000-167758200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr5:167754000-167758800	Enhancers	H9 Cell Line	embryonic stem cell
46	chr5:167754000-167758800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr5:167754000-167758800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr5:167754200-167754400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:167754200-167755200	Weak transcription	NHLF	lung
50	chr5:167754200-167755400	Transcr. at gene 5' and 3'	A549	lung

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