Variant report

Variant	rs17551259
Chromosome Location	chr5:167790751-167790752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:167779528..167782298-chr5:167789585..167792787,3	MCF-7	breast:
2	chr5:167785611..167788847-chr5:167789528..167793289,3	K562	blood:
3	chr5:167788428..167791053-chr5:167813352..167815087,2	K562	blood:
4	chr5:167718710..167720308-chr5:167790512..167793036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113645	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17663513	1.00[AFR][1000 genomes]
rs72828874	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534607	chr5:167661667-168454396	Active TSS Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv949154	chr5:167691208-168323234	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023985	chr5:167756193-168285807	Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv537941	chr5:167756193-168285807	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv3444818	chr5:167770667-167902204	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167762200-167791800	Weak transcription	Hela-S3	cervix
2	chr5:167780800-167790800	Weak transcription	Gastric	stomach
3	chr5:167784000-167792400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:167784200-167791200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:167784200-167791800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:167784200-167794800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:167784400-167791600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:167784600-167791200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:167785000-167790800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:167785200-167791200	Weak transcription	Lung	lung
11	chr5:167785200-167791400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:167785400-167790800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:167785400-167790800	Weak transcription	Fetal Brain Female	brain
14	chr5:167785400-167791000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:167785400-167791200	Weak transcription	Brain Substantia Nigra	brain
16	chr5:167785600-167790800	Weak transcription	Brain Angular Gyrus	brain
17	chr5:167785600-167791200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:167786200-167794800	Enhancers	Placenta	Placenta
19	chr5:167786800-167791600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:167787600-167790800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:167787600-167793600	Enhancers	Pancreas	Pancrea
22	chr5:167788200-167790800	Weak transcription	Esophagus	oesophagus
23	chr5:167788200-167791600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:167788200-167793200	Enhancers	Fetal Intestine Small	intestine
25	chr5:167788400-167793000	Enhancers	Fetal Intestine Large	intestine
26	chr5:167789400-167790800	Enhancers	NHEK	skin
27	chr5:167789400-167791400	Weak transcription	Right Atrium	heart
28	chr5:167789600-167790800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:167789600-167790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:167789600-167791600	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:167789600-167792000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:167789600-167792400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr5:167789600-167797200	Enhancers	Fetal Brain Male	brain
34	chr5:167789800-167790800	Weak transcription	Stomach Mucosa	stomach
35	chr5:167789800-167791200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:167789800-167791200	Weak transcription	Liver	Liver
37	chr5:167789800-167791200	Enhancers	HepG2	liver
38	chr5:167789800-167791400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr5:167789800-167792000	Enhancers	A549	lung
40	chr5:167790000-167791200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:167790000-167792200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr5:167790600-167792200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:167790600-167792400	Enhancers	Osteobl	bone
44	chr5:167790600-167793200	Enhancers	Fetal Heart	heart
45	chr5:167790600-167793400	Enhancers	Placenta Amnion	Placenta Amnion
46	chr5:167790600-167793600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr5:167790600-167793800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:167790600-167793800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:167790600-167793800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:167790600-167793800	Enhancers	HMEC	breast

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