Variant report

Variant	rs1755775
Chromosome Location	chr14:36691187-36691188
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11845130	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1618855	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1632250	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1755774	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1755776	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1755777	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1755778	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1755779	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1755781	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1755782	0.86[EUR][1000 genomes]
rs1755783	0.89[EUR][1000 genomes]
rs1755784	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1755785	0.89[EUR][1000 genomes]
rs1755786	0.88[EUR][1000 genomes]
rs1755787	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1755788	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs1755789	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1755791	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1766135	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1766136	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1766137	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1766138	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1766139	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1766140	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1766141	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1766143	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1766144	0.89[EUR][1000 genomes]
rs1766145	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1766146	0.89[EUR][1000 genomes]
rs1766147	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1766149	0.84[EUR][1000 genomes]
rs1863347	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs1863348	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs1895802	0.89[EUR][1000 genomes]
rs1895803	0.89[EUR][1000 genomes]
rs1895804	0.89[EUR][1000 genomes]
rs2553570	0.84[EUR][1000 genomes]
rs2764575	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs2774164	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2787423	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2787424	0.89[EUR][1000 genomes]
rs2787425	0.89[EUR][1000 genomes]
rs34454287	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67263215	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1041441	chr14:36545463-36756347	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv542041	chr14:36545463-36756347	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
8	nsv901633	chr14:36646725-36724607	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv901634	chr14:36652690-36694219	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
11	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36684000-36692200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:36684400-36692200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:36687600-36695600	Weak transcription	NHEK	skin
4	chr14:36689600-36692400	Enhancers	Brain Substantia Nigra	brain
5	chr14:36689800-36691600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:36690000-36691400	Enhancers	Brain Hippocampus Middle	brain
7	chr14:36690000-36691400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:36690200-36691200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:36690200-36691200	Enhancers	Brain Angular Gyrus	brain
10	chr14:36690200-36691400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:36690400-36691200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr14:36690400-36691200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:36690600-36692800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr14:36690800-36691200	Enhancers	Brain Germinal Matrix	brain
15	chr14:36690800-36691800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:36690800-36692200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:36690800-36699000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:36691000-36692000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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