Variant report

Variant	rs17557994
Chromosome Location	chr10:99108863-99108864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99102535..99104464-chr10:99107918..99109887,2	K562	blood:
2	chr10:99095422..99098240-chr10:99107284..99109589,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1889545	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2297990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28362478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2861953	0.88[EUR][1000 genomes]
rs35502594	0.82[EUR][1000 genomes]
rs3763672	0.88[EUR][1000 genomes]
rs3893064	0.88[EUR][1000 genomes]
rs41300215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41300217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41303833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4418736	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4919095	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59058784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60305070	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60890987	0.84[EUR][1000 genomes]
rs964733	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv3516239	chr10:99107769-99110444	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2571727	chr10:99108004-99109461	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99095200-99109400	Weak transcription	HSMMtube	muscle
2	chr10:99095200-99115200	Weak transcription	Gastric	stomach
3	chr10:99095400-99109400	Weak transcription	Liver	Liver
4	chr10:99095400-99115600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:99095400-99115600	Weak transcription	Left Ventricle	heart
6	chr10:99095400-99115600	Weak transcription	Right Ventricle	heart
7	chr10:99097400-99109600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:99097400-99115200	Weak transcription	A549	lung
9	chr10:99097400-99116000	Weak transcription	Hela-S3	cervix
10	chr10:99097600-99109400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:99097600-99109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:99097600-99109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:99097600-99115200	Weak transcription	NHEK	skin
14	chr10:99097600-99115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:99098200-99116200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:99098400-99109200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:99098400-99109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:99098400-99115200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:99098600-99114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:99098600-99115400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:99099200-99109600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:99099400-99113600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:99099400-99115600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:99101800-99114400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:99102400-99115400	Weak transcription	Pancreas	Pancrea
26	chr10:99103000-99116000	Weak transcription	Brain Germinal Matrix	brain
27	chr10:99103400-99109400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:99104200-99109400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:99104400-99109200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:99104400-99109800	Weak transcription	Primary B cells from cord blood	blood
31	chr10:99105400-99109400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:99105600-99109400	Weak transcription	NH-A	brain
33	chr10:99105600-99113800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:99106400-99109600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:99106400-99111600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:99106600-99109200	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:99106600-99109200	Weak transcription	NHLF	lung
38	chr10:99106600-99109600	Weak transcription	HSMM	muscle
39	chr10:99106600-99113400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:99106800-99116400	Weak transcription	Aorta	Aorta
41	chr10:99107000-99110800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:99107000-99115400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:99107000-99131800	Weak transcription	Fetal Kidney	kidney
44	chr10:99107200-99109000	Weak transcription	Placenta	Placenta
45	chr10:99107200-99109400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:99107200-99109600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:99107200-99115200	Weak transcription	Psoas Muscle	Psoas
48	chr10:99107200-99115400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr10:99107200-99115600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:99107200-99116000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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