Variant report

Variant	rs17559158
Chromosome Location	chr4:16268263-16268264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11726505	0.81[EUR][1000 genomes]
rs11728731	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11735246	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2041541	0.82[EUR][1000 genomes]
rs2312941	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846353	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3846354	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41459449	1.00[CHB][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55863436	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6449220	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73118055	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7668272	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7677927	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7681211	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7695512	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7696623	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7698003	0.95[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16235400-16272800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:16254800-16268800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:16256200-16270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:16256400-16270600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:16258200-16278600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:16258400-16270600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:16258400-16271200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:16258600-16268800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:16258600-16270600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:16258600-16272000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:16259000-16271000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:16259200-16271000	Weak transcription	Adipose Nuclei	Adipose
13	chr4:16259400-16270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:16259400-16270800	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:16259400-16272200	Weak transcription	Fetal Intestine Large	intestine
16	chr4:16261600-16272200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:16264400-16268600	Enhancers	Primary B cells from cord blood	blood
18	chr4:16264800-16269600	Weak transcription	Left Ventricle	heart
19	chr4:16265000-16270600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:16266200-16268600	Weak transcription	Brain Angular Gyrus	brain
21	chr4:16266400-16271000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:16266600-16270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:16267400-16268400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:16267400-16268400	Enhancers	Primary B cells from peripheral blood	blood
25	chr4:16268000-16272000	Weak transcription	Pancreas	Pancrea
26	chr4:16268200-16270200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:16268200-16270400	Weak transcription	Fetal Stomach	stomach
28	chr4:16268200-16272200	Weak transcription	Fetal Intestine Small	intestine

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