Variant report

Variant	rs17562053
Chromosome Location	chr5:111280867-111280868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12513517	1.00[ASN][1000 genomes]
rs12516793	1.00[ASN][1000 genomes]
rs17494391	1.00[ASN][1000 genomes]
rs17562482	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs27413	1.00[AFR][1000 genomes]
rs4957995	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599367	chr5:110924280-111602713	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111273800-111281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:111279200-111281000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:111279200-111281400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:111279200-111281400	Weak transcription	HSMM	muscle
5	chr5:111279200-111281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:111279400-111281200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:111279400-111281200	Weak transcription	HSMMtube	muscle
8	chr5:111279400-111281400	Weak transcription	NHDF-Ad	bronchial
9	chr5:111279400-111281400	Weak transcription	Osteobl	bone
10	chr5:111279400-111283200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:111279400-111283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:111279400-111283400	Weak transcription	NHLF	lung
13	chr5:111279400-111283800	Weak transcription	HMEC	breast
14	chr5:111279400-111283800	Weak transcription	NHEK	skin
15	chr5:111279600-111281400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:111280800-111281800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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