Variant report
| Variant | rs1756358 |
|---|---|
| Chromosome Location | chr14:83106846-83106847 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr14:83106666-83106964 | MCF10A-Er-Src | breast: | n/a | chr14:83106935-83106943 |
| 2 | POLR2A | chr14:83106682-83106882 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258743 | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1756360 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2689119 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2798373 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2798374 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2798375 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2798378 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7153004 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054303 | chr14:83018016-83258920 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2758364 | chr14:83035707-83146797 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2760002 | chr14:83035707-83146797 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2751286 | chr14:83066038-83203657 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
