Variant report

Variant	rs17565410
Chromosome Location	chr6:20175484-20175485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:20172910..20175572-chr6:20404331..20406110,2	K562	blood:
2	chr6:20169254..20171041-chr6:20174729..20177688,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17565285	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029729	chr6:20113226-20235122	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538155	chr6:20113226-20235122	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1033904	chr6:20127596-20210374	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1032899	chr6:20170426-20197881	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20139600-20201200	Weak transcription	Fetal Lung	lung
2	chr6:20152200-20183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:20153000-20181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:20161400-20179400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:20162000-20180600	Weak transcription	Pancreas	Pancrea
6	chr6:20162800-20193000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:20163800-20183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:20167200-20182800	Weak transcription	Fetal Stomach	stomach
9	chr6:20169200-20180400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:20169200-20186600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:20169600-20176200	Weak transcription	Stomach Mucosa	stomach
12	chr6:20170400-20180400	Weak transcription	Fetal Heart	heart
13	chr6:20170400-20186000	Weak transcription	NHDF-Ad	bronchial
14	chr6:20170400-20186600	Weak transcription	Psoas Muscle	Psoas
15	chr6:20170600-20180400	Weak transcription	Left Ventricle	heart
16	chr6:20170600-20183000	Weak transcription	Esophagus	oesophagus
17	chr6:20170600-20184400	Weak transcription	Spleen	Spleen
18	chr6:20170600-20186200	Weak transcription	Aorta	Aorta
19	chr6:20170600-20192600	Weak transcription	Ovary	ovary
20	chr6:20171000-20180600	Weak transcription	Gastric	stomach
21	chr6:20171000-20184400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:20171200-20198600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:20172600-20178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:20173400-20175600	Weak transcription	Fetal Intestine Small	intestine
25	chr6:20173800-20179200	Enhancers	Fetal Intestine Large	intestine
26	chr6:20174400-20175600	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr6:20174600-20176200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:20174600-20187200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:20174800-20175800	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:20174800-20176200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:20174800-20176400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:20174800-20181400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:20175000-20175800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:20175000-20176400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:20175000-20176600	Enhancers	Dnd41	blood
36	chr6:20175000-20178200	Weak transcription	Small Intestine	intestine
37	chr6:20175000-20181400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:20175000-20181400	Weak transcription	GM12878-XiMat	blood
39	chr6:20175000-20181800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:20175000-20182200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:20175000-20182800	Weak transcription	Colonic Mucosa	Colon
42	chr6:20175000-20201800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:20175000-20205200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:20175200-20175600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:20175200-20180600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:20175200-20202000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:20175400-20176400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:20175400-20177400	Weak transcription	Monocytes-CD14+_RO01746	blood

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