Variant report

Variant	rs17566512
Chromosome Location	chr11:84024989-84024990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55677917	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84022000-84027600	Weak transcription	Ovary	ovary
2	chr11:84024200-84026000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:84024200-84028600	Active TSS	Brain Substantia Nigra	brain
4	chr11:84024400-84029000	Active TSS	Brain Cingulate Gyrus	brain
5	chr11:84024800-84025000	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr11:84024800-84025000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
7	chr11:84024800-84025200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:84024800-84025200	Enhancers	Right Atrium	heart
9	chr11:84024800-84025400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:84024800-84025400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:84024800-84025400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:84024800-84025600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:84024800-84028600	Active TSS	Brain Hippocampus Middle	brain
14	chr11:84024800-84028800	Active TSS	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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