Variant report

Variant	rs17570271
Chromosome Location	chr1:225926301-225926302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10915864	0.81[EUR][1000 genomes]
rs10915866	0.90[EUR][1000 genomes]
rs10915868	0.89[EUR][1000 genomes]
rs11587971	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11588772	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12076509	0.90[EUR][1000 genomes]
rs12077115	0.91[EUR][1000 genomes]
rs12081218	0.90[EUR][1000 genomes]
rs4653429	0.91[EUR][1000 genomes]
rs4653655	0.90[EUR][1000 genomes]
rs4653660	0.91[EUR][1000 genomes]
rs4653663	1.00[ASN][1000 genomes]
rs4653664	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4653665	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4653667	0.86[ASN][1000 genomes]
rs4653668	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7521999	1.00[ASN][1000 genomes]
rs7525768	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1795046	chr1:225874059-226091150	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv1834932	chr1:225874059-226091150	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv525391	chr1:225912620-225928538	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225915200-225933600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:225921400-225934400	Weak transcription	Esophagus	oesophagus
3	chr1:225925200-225932800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:225925400-225933000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:225925400-225938200	Weak transcription	Spleen	Spleen
6	chr1:225925600-225933800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:225925800-225926600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:225925800-225926800	Weak transcription	HepG2	liver
9	chr1:225925800-225927000	Enhancers	Hela-S3	cervix
10	chr1:225925800-225927600	Weak transcription	NHDF-Ad	bronchial
11	chr1:225925800-225932600	Weak transcription	Brain Germinal Matrix	brain
12	chr1:225925800-225932800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:225925800-225932800	Weak transcription	Fetal Lung	lung
14	chr1:225925800-225933000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:225925800-225933000	Weak transcription	Right Atrium	heart
16	chr1:225925800-225934400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:225925800-225934400	Weak transcription	HMEC	breast
18	chr1:225925800-225938000	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links