Variant report

Variant	rs17571915
Chromosome Location	chr3:177366578-177366579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11922112	1.00[ASN][1000 genomes]
rs11922790	1.00[ASN][1000 genomes]
rs11922798	1.00[ASN][1000 genomes]
rs12485451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13060498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13074870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076650	0.97[ASN][1000 genomes]
rs13090366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967405	1.00[ASN][1000 genomes]
rs4857724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765691	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6780417	1.00[ASN][1000 genomes]
rs6789946	0.97[ASN][1000 genomes]
rs6790341	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv514189	chr3:177294490-177383578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv4131	chr3:177366549-177399301	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177360600-177369600	Weak transcription	Fetal Brain Female	brain
2	chr3:177360800-177367000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:177360800-177367200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr3:177361000-177369800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:177361400-177367200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:177363000-177369600	Weak transcription	Fetal Kidney	kidney
7	chr3:177363400-177366800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:177363600-177366800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr3:177363800-177366800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:177363800-177367000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:177364400-177366600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:177364400-177367000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:177364600-177367200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:177364600-177367200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:177364800-177369800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:177364800-177370800	Weak transcription	Psoas Muscle	Psoas
17	chr3:177365200-177366600	Enhancers	Thymus	Thymus
18	chr3:177365800-177370800	Weak transcription	Aorta	Aorta
19	chr3:177366000-177367200	Enhancers	Dnd41	blood
20	chr3:177366000-177368000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:177366000-177369800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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